ACDC

Contents:

  • ACDC in Python
  • acdc_py
  • acdc_py.GS
  • acdc_py.SA
  • acdc_py.get_opt
  • acdc_py.pp
  • acdc_py.pl
  • acdc_py.tl
  • acdc_py.config

Tutorials:

  • Clustering human single-cell RNA seq data with ACDC
ACDC
  • Index

Index

A | C | E | G | M | N | R | S

A

  • acdc_py
    • module, [1]
  • acdc_py.config
    • module, [1]
  • acdc_py.get_opt
    • module, [1]
  • acdc_py.GS
    • module
  • acdc_py.pl
    • module, [1]
  • acdc_py.pp
    • module, [1]
  • acdc_py.SA
    • module
  • acdc_py.tl
    • module, [1]

C

  • cluster_final() (in module acdc_py.tl)
  • corr_distance() (in module acdc_py.pp)

E

  • extract() (in module acdc_py.tl)

G

  • GS() (in module acdc_py.GS)
  • GS_clustering() (in module acdc_py.get_opt)
  • GS_metric_search_data() (in module acdc_py.get_opt)
  • GS_metric_value() (in module acdc_py.get_opt)
  • GS_params() (in module acdc_py.get_opt)
  • GS_search_space() (in module acdc_py.pl)

M

  • merge() (in module acdc_py.tl)
  • metric_vs_n_clusts() (in module acdc_py.pl)
  • module
    • acdc_py, [1]
    • acdc_py.config, [1]
    • acdc_py.get_opt, [1]
    • acdc_py.GS
    • acdc_py.pl, [1]
    • acdc_py.pp, [1]
    • acdc_py.SA
    • acdc_py.tl, [1]

N

  • neighbors_graph() (in module acdc_py.pp)
  • neighbors_knn() (in module acdc_py.pp)

R

  • rename() (in module acdc_py.tl)

S

  • SA() (in module acdc_py.SA)
  • SA_clustering() (in module acdc_py.get_opt)
  • SA_metric_search_data() (in module acdc_py.get_opt)
  • SA_metric_value() (in module acdc_py.get_opt)
  • SA_params() (in module acdc_py.get_opt)
  • SA_search_space() (in module acdc_py.pl)
  • set_clust_alg() (in module acdc_py.config), [1]
  • set_corr_distance_dtype() (in module acdc_py.config), [1]
  • set_SS_bootstraps() (in module acdc_py.config), [1]
  • set_SS_weights() (in module acdc_py.config), [1]
  • silhouette_scores() (in module acdc_py.pl)

© Copyright 2025, Luca Zanella, Alexander Lewis Wang.

Built with Sphinx using a theme provided by Read the Docs.