ACDC
Contents:
ACDC in Python
acdc_py
acdc_py.GS
acdc_py.SA
acdc_py.get_opt
acdc_py.pp
acdc_py.pl
acdc_py.tl
acdc_py.config
Tutorials:
Clustering human single-cell RNA seq data with ACDC
Tutorial: Diffusion Map Embedding & Label Transfer with
acdc_py
ACDC
Index
Index
A
|
C
|
D
|
E
|
G
|
M
|
N
|
P
|
R
|
S
|
T
A
acdc_py
module
,
[1]
acdc_py.config
module
,
[1]
acdc_py.get_opt
module
,
[1]
acdc_py.GS
module
acdc_py.pl
module
,
[1]
acdc_py.pp
module
,
[1]
acdc_py.SA
module
acdc_py.tl
module
,
[1]
C
cluster_final() (in module acdc_py.tl)
compute_diffusion_map() (in module acdc_py.pp)
corr_distance() (in module acdc_py.pp)
D
diffusion_reference_mapping() (in module acdc_py.tl)
E
extract() (in module acdc_py.tl)
G
GS() (in module acdc_py.GS)
GS_clustering() (in module acdc_py.get_opt)
GS_metric_search_data() (in module acdc_py.get_opt)
GS_metric_value() (in module acdc_py.get_opt)
GS_params() (in module acdc_py.get_opt)
GS_search_space() (in module acdc_py.pl)
M
merge() (in module acdc_py.tl)
metric_vs_n_clusts() (in module acdc_py.pl)
module
acdc_py
,
[1]
acdc_py.config
,
[1]
acdc_py.get_opt
,
[1]
acdc_py.GS
acdc_py.pl
,
[1]
acdc_py.pp
,
[1]
acdc_py.SA
acdc_py.tl
,
[1]
N
neighbors_graph() (in module acdc_py.pp)
neighbors_knn() (in module acdc_py.pp)
nystrom_extension() (in module acdc_py.pp)
P
plot_diffusion_map() (in module acdc_py.pl)
R
rename() (in module acdc_py.tl)
S
SA() (in module acdc_py.SA)
SA_clustering() (in module acdc_py.get_opt)
SA_metric_search_data() (in module acdc_py.get_opt)
SA_metric_value() (in module acdc_py.get_opt)
SA_params() (in module acdc_py.get_opt)
SA_search_space() (in module acdc_py.pl)
set_clust_alg() (in module acdc_py.config)
,
[1]
set_corr_distance_dtype() (in module acdc_py.config)
,
[1]
set_SS_bootstraps() (in module acdc_py.config)
,
[1]
set_SS_weights() (in module acdc_py.config)
,
[1]
silhouette_scores() (in module acdc_py.pl)
T
transfer_labels() (in module acdc_py.tl)