ACDC in Python
===============

acdc_py
================

.. automodule:: acdc_py
   :members:
   :undoc-members:
   :show-inheritance:

acdc_py.GS
===============

.. autofunction:: acdc_py.GS
   :noindex:

acdc_py.SA
===============

.. autofunction:: acdc_py.SA
   :noindex:


acdc_py.get_opt
================

.. automodule:: acdc_py.get_opt
   :members:
   :undoc-members:
   :show-inheritance:
.. autofunction:: acdc_py.get_opt.SA_clustering
.. autofunction:: acdc_py.get_opt.SA_params
.. autofunction:: acdc_py.get_opt.SA_metric_value
.. autofunction:: acdc_py.get_opt.SA_metric_search_data
.. autofunction:: acdc_py.get_opt.GS_clustering
.. autofunction:: acdc_py.get_opt.GS_params
.. autofunction:: acdc_py.get_opt.GS_metric_value
.. autofunction:: acdc_py.get_opt.GS_metric_search_data


acdc_py.pp
================

.. automodule:: acdc_py.pp
   :members:
   :undoc-members:
   :show-inheritance:
.. autofunction:: acdc_py.pp.corr_distance
.. autofunction:: acdc_py.pp.neighbors_knn
.. autofunction:: acdc_py.pp.neighbors_graph
.. autofunction:: acdc_py.pp.compute_diffusion_map
.. autofunction:: acdc_py.pp.nystrom_extension


acdc_py.pl
================

.. automodule:: acdc_py.pl
   :members:
   :undoc-members:
   :show-inheritance:
.. autofunction:: acdc_py.pl.GS_search_space
.. autofunction:: acdc_py.pl.SA_search_space
.. autofunction:: acdc_py.pl.metric_vs_n_clusts
.. autofunction:: acdc_py.pl.silhouette_scores
.. autofunction:: acdc_py.pl.plot_diffusion_map


acdc_py.tl
================

.. automodule:: acdc_py.tl
   :members:
   :undoc-members:
   :show-inheritance:
.. autofunction:: acdc_py.tl.cluster_final
.. autofunction:: acdc_py.tl.extract
.. autofunction:: acdc_py.tl.merge
.. autofunction:: acdc_py.tl.rename
.. autofunction:: acdc_py.tl.diffusion_reference_mapping
.. autofunction:: acdc_py.tl.transfer_labels



acdc_py.config
================

.. automodule:: acdc_py.config
   :members:
   :undoc-members:
   :show-inheritance: